LOC_Os08g33340.1 (RAD23D, LOC_Os08g33340)

Aliases : RAD23D, LOC_Os08g33340

Description : shuttle protein (RAD23)

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g33340.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G79650	RAD23B, RAD23	Rad23 UV excision repair protein family	0.03	OrthoFinder output from all 47 species
Aev_g45033	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Als_g51273	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Als_g63686	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Aop_g07923	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Aop_g10404	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Ceric.13G041900.1	RAD23B, RAD23,...	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Ceric.37G011200.1	RAD23B, RAD23,...	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Cre08.g366400	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
Dcu_g06924	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g42383	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Len_g13341	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Len_g27857	RAD23A	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Mp1g26290.1	RAD23B, RAD23	shuttle protein (RAD23)	0.04	OrthoFinder output from all 47 species
Nbi_g09383	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Ore_g43759	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g31543	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g63807	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Sam_g26899	No alias	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Spa_g06239	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Spa_g18087	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Tin_g19292	RAD23B, RAD23	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e036768_P002	RAD23D, Zm00001e036768	shuttle protein (RAD23)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
CC	GO:0005849	mRNA cleavage factor complex	IEP	HCCA
BP	GO:0006378	mRNA polyadenylation	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031124	mRNA 3'-end processing	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	4	76
IPR015360	XPC-bd	274	329
IPR015940	UBA	162	197
IPR015940	UBA	354	390

External Links

No external refs found!

LOC_Os08g33340.1 (RAD23D, LOC_Os08g33340)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation