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  5. LOC_Os08g31810.3

LOC_Os08g31810.3 (LOC_Os08g31810)


Aliases : LOC_Os08g31810

Description : pre-60S ribosomal subunit assembly factor (NOP15)


Gene families : OG0005172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g31810.3

Target Alias Description ECC score Gene Family Method Actions
Adi_g023728 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
Aev_g04449 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0078.g038170 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.03 OrthoFinder output from all 47 species
Cba_g00775 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.03 OrthoFinder output from all 47 species
Cre08.g368500 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g13309 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.04 OrthoFinder output from all 47 species
Len_g22344 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
MA_128667g0010 No alias pre-60S ribosomal subunit assembly factor (NOP15) 0.04 OrthoFinder output from all 47 species
Mp6g13260.1 No alias pre-60S ribosomal subunit assembly factor (NOP15) 0.02 OrthoFinder output from all 47 species
Pir_g02702 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002614 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
Sam_g13355 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
Sam_g23704 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.05 OrthoFinder output from all 47 species
Solyc06g074720.4.1 Solyc06g074720 pre-60S ribosomal subunit assembly factor (NOP15) 0.06 OrthoFinder output from all 47 species
Spa_g08087 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.02 OrthoFinder output from all 47 species
Tin_g38815 No alias pre-60S ribosomal subunit assembly factor *(NOP15) &... 0.04 OrthoFinder output from all 47 species
Zm00001e022371_P002 Zm00001e022371 pre-60S ribosomal subunit assembly factor (NOP15) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 56 125
No external refs found!