1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os08g31780.1

LOC_Os08g31780.1 (RPM1, RPS3, LOC_Os08g31780)


Aliases : RPM1, RPS3, LOC_Os08g31780

Description : no description available(sp|q2r8l1|rga5s_orysj : 415.0)


Gene families : OG0000422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g31780.1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g17304.1 RPP13, LOC_Os02g17304 no description available(sp|q2r8l1|rga5s_orysj : 379.0) 0.02 OrthoFinder output from all 47 species
LOC_Os04g11760.1 LOC_Os04g11760 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os04g11780.1 LOC_Os04g11780 no description available(sp|f7j0n2|rga5r_orysj : 115.0) 0.04 OrthoFinder output from all 47 species
LOC_Os04g14220.2 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os07g12680.1 LOC_Os07g12680 no description available(sp|f7j0n2|rga5r_orysj : 105.0) 0.04 OrthoFinder output from all 47 species
LOC_Os09g09750.1 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os11g12020.1 LOC_Os11g12020 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g12350.1 LOC_Os11g12350 Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os11g17110.1 LOC_Os11g17110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g17330.1 LOC_Os11g17330 no description available(sp|q2r8l1|rga5s_orysj : 391.0) 0.04 OrthoFinder output from all 47 species
LOC_Os11g41210.1 LOC_Os11g41210 no description available(sp|q2r8l1|rga5s_orysj : 81.6) 0.03 OrthoFinder output from all 47 species
LOC_Os11g41540.2 LOC_Os11g41540 Putative disease resistance protein At1g50180... 0.02 OrthoFinder output from all 47 species
LOC_Os12g17130.1 LOC_Os12g17130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR041118 Rx_N 12 94
IPR002182 NB-ARC 173 427
No external refs found!