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  5. LOC_Os08g28600.1

LOC_Os08g28600.1 (LOC_Os08g28600)


Aliases : LOC_Os08g28600

Description : no description available(sp|f7j0n2|rga5r_orysj : 439.0)


Gene families : OG0000422 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000422_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g28600.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00245940 evm_27.TU.AmTr_v1... Disease resistance protein RPP8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00207600 evm_27.TU.AmTr_v1... Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00088p00057720 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00090p00087950 RPP13,... Disease resistance protein RPP13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00090p00137350 RPP13,... Disease resistance protein RPP13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00205p00026120 evm_27.TU.AmTr_v1... Disease resistance protein RPM1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G46710 No alias NB-ARC domain-containing disease resistance protein 0.03 OrthoFinder output from all 47 species
GSVIVT01024090001 No alias Disease susceptibility protein LOV1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01024097001 No alias Probable disease resistance RPP8-like protein 2... 0.04 OrthoFinder output from all 47 species
LOC_Os02g35210.1 LOC_Os02g35210 no description available(sp|q2r8l1|rga5s_orysj : 458.0) 0.02 OrthoFinder output from all 47 species
LOC_Os08g07920.1 LOC_Os08g07920 no description available(sp|q2qzf1|pik6_orysj : 119.0) 0.03 OrthoFinder output from all 47 species
LOC_Os11g12020.1 LOC_Os11g12020 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc04g026110.4.1 RPP13, Solyc04g026110 Disease resistance protein RPP13 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e011354_P001 Zm00001e011354 no description available(sp|p0do08|pikm2_orysj : 121.0) 0.03 OrthoFinder output from all 47 species
Zm00001e024479_P001 RPM1, RPS3,... Disease resistance protein RPM1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003855 3-dehydroquinate dehydratase activity IEP HCCA
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR041118 Rx_N 6 88
IPR002182 NB-ARC 174 423
No external refs found!