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  5. LOC_Os08g27720.1

LOC_Os08g27720.1 (LOC_Os08g27720)


Aliases : LOC_Os08g27720

Description : Pirin-like protein OS=Solanum lycopersicum (sp|q9see4|pirl_sollc : 297.0)


Gene families : OG0002091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002091_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g27720.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AT1G50590 No alias RmlC-like cupins superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G59220 PRN, PRN1, ATPIRIN1 pirin 0.06 OrthoFinder output from all 47 species
Adi_g097979 No alias transcriptional co-regulator *(Pirin) & original... 0.02 OrthoFinder output from all 47 species
Ala_g21819 No alias transcriptional co-regulator *(Pirin) & original... 0.02 OrthoFinder output from all 47 species
Aob_g07773 No alias transcriptional co-regulator *(Pirin) & original... 0.03 OrthoFinder output from all 47 species
Aop_g60524 No alias transcriptional co-regulator *(Pirin) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012617 No alias transcriptional co-regulator *(Pirin) & original... 0.03 OrthoFinder output from all 47 species
Dac_g14581 No alias transcriptional co-regulator *(Pirin) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g04607 No alias transcriptional co-regulator *(Pirin) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os09g31120.1 LOC_Os09g31120 Pirin-like protein At1g50590 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Smo446995 No alias Pirin-like protein OS=Solanum lycopersicum 0.04 OrthoFinder output from all 47 species
Spa_g25433 No alias transcriptional co-regulator *(Pirin) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e025778_P001 Zm00001e025778 Pirin-like protein OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Zm00001e034512_P001 Zm00001e034512 Pirin-like protein At1g50590 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008778 Pirin_C_dom 229 333
IPR003829 Pirin_N_dom 80 175
No external refs found!