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  5. LOC_Os08g27180.1

LOC_Os08g27180.1 (LOC_Os08g27180)


Aliases : LOC_Os08g27180

Description : no hits & (original description: none)


Gene families : OG0000166 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g27180.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g08730.1 LOC_Os01g08730 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os01g18550.1 LOC_Os01g18550 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os01g21480.1 LOC_Os01g21480 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os01g38810.1 LOC_Os01g38810 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
LOC_Os02g01420.1 LOC_Os02g01420 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os02g24310.1 LOC_Os02g24310 no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
LOC_Os02g25370.1 LOC_Os02g25370 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g25520.1 LOC_Os02g25520 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g07680.1 LOC_Os03g07680 no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
LOC_Os03g54020.1 LOC_Os03g54020 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os04g05910.1 LOC_Os04g05910 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g07170.1 LOC_Os04g07170 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g22840.1 LOC_Os04g22840 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g25590.1 LOC_Os04g25590 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g34820.1 LOC_Os04g34820 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g14000.1 LOC_Os05g14000 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os05g14460.1 LOC_Os05g14460 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os05g19700.1 LOC_Os05g19700 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os05g27860.1 LOC_Os05g27860 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os05g35880.1 LOC_Os05g35880 no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
LOC_Os05g39460.1 LOC_Os05g39460 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g48110.1 LOC_Os05g48110 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g10380.1 LOC_Os06g10380 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g15050.1 LOC_Os06g15050 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os06g16900.1 LOC_Os06g16900 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g21150.1 LOC_Os06g21150 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g27900.1 LOC_Os06g27900 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os07g03350.1 LOC_Os07g03350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g17510.1 LOC_Os07g17510 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g31900.1 LOC_Os07g31900 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os07g34090.1 LOC_Os07g34090 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g39610.1 LOC_Os07g39610 no hits & (original description: none) 0.2 OrthoFinder output from all 47 species
LOC_Os08g03730.1 LOC_Os08g03730 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g04850.1 LOC_Os08g04850 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g08950.1 LOC_Os08g08950 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g17120.1 LOC_Os08g17120 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g24590.1 LOC_Os08g24590 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os08g36730.1 LOC_Os08g36730 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os09g02090.1 LOC_Os09g02090 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os09g07330.1 LOC_Os09g07330 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
LOC_Os09g11060.1 LOC_Os09g11060 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os10g07554.1 LOC_Os10g07554 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os10g16800.1 LOC_Os10g16800 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os10g19326.1 LOC_Os10g19326 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os11g03950.1 LOC_Os11g03950 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os11g14350.1 LOC_Os11g14350 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os11g17410.1 LOC_Os11g17410 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os11g19550.1 LOC_Os11g19550 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os11g23810.1 LOC_Os11g23810 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os11g24870.1 LOC_Os11g24870 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g31180.1 LOC_Os11g31180 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os11g41050.1 LOC_Os11g41050 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g01640.1 LOC_Os12g01640 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os12g07630.1 LOC_Os12g07630 no hits & (original description: none) 0.2 OrthoFinder output from all 47 species
LOC_Os12g13080.1 LOC_Os12g13080 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os12g14820.1 LOC_Os12g14820 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os12g16400.1 LOC_Os12g16400 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os12g22910.1 LOC_Os12g22910 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g23240.1 LOC_Os12g23240 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os12g24680.1 LOC_Os12g24680 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os12g25300.1 LOC_Os12g25300 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os12g26070.1 LOC_Os12g26070 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g37240.1 LOC_Os12g37240 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR004242 Transposase_21 178 244
No external refs found!