LOC_Os08g15308.1 (RPS18, LOC_Os08g15308)

Aliases : RPS18, LOC_Os08g15308

Description : component psRPS18 of small ribosomal subunit proteome

Gene families : OG0003437 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003437_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g15308.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
ATCG00650	RPS18	ribosomal protein S18	0.43	OrthoFinder output from all 47 species
Ceric.01G105500.1	RPS18, Ceric.01G105500	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.02G015200.1	RPS18, Ceric.02G015200	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.05G041200.1	RPS18, Ceric.05G041200	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.28G030100.1	RPS18, Ceric.28G030100	component *(bS18c) of small plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ceric.32G035900.1	RPS18, Ceric.32G035900	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.38G007700.1	RPS18, Ceric.38G007700	component *(bS18c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os06g39716.1	RPS18, LOC_Os06g39716	component psRPS18 of small ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Solyc00g500022.1.1	RPS18, Solyc00g500022	component psRPS18 of small ribosomal subunit proteome	0.24	OrthoFinder output from all 47 species
Solyc01g017085.1.1	RPS18, Solyc01g017085	component psRPS18 of small ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species
Zm00001e042027_P001	RPS18, Zm00001e042027	component psRPS18 of small ribosomal subunit proteome	0.17	OrthoFinder output from all 47 species
Zm00001e042146_P001	RPS18, Zm00001e042146	component psRPS18 of small ribosomal subunit proteome	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001648	Ribosomal_S18	53	102

External Links

No external refs found!

LOC_Os08g15308.1 (RPS18, LOC_Os08g15308)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation