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  5. LOC_Os08g08210.1

LOC_Os08g08210.1 (SDG2, ATXR3, LOC_Os08g08210)


Aliases : SDG2, ATXR3, LOC_Os08g08210

Description : class III/Trithorax histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0002791 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002791_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g08210.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00149000 SDG2, ATXR3,... Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
AT4G15180 SDG2, ATXR3 SET domain protein 2 0.07 OrthoFinder output from all 47 species
Adi_g039581 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116452 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aev_g14143 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Ala_g13000 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Als_g21633 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aob_g28999 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.08 OrthoFinder output from all 47 species
Aop_g29882 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene24078.t2 SDG2, ATXR3,... class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0043.g027108 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.09 OrthoFinder output from all 47 species
Ceric.18G017200.1 SDG2, ATXR3,... class-III histone methyltransferase *(Trx) & original... 0.1 OrthoFinder output from all 47 species
Cre17.g742700 SDG2, ATXR3 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Dcu_g07181 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.08 OrthoFinder output from all 47 species
Dde_g26109 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g05119 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01030649001 SDG2, ATXR3 Chromatin organisation.histone modifications.histone... 0.13 OrthoFinder output from all 47 species
Len_g14756 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g02478 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
MA_102811g0010 SDG2, ATXR3 class III/Trithorax histone methyltransferase component... 0.09 OrthoFinder output from all 47 species
MA_102811g0020 SDG2, ATXR3 class III/Trithorax histone methyltransferase component... 0.04 OrthoFinder output from all 47 species
Mp2g06500.1 SDG2, ATXR3 class III/Trithorax histone methyltransferase component... 0.06 OrthoFinder output from all 47 species
Msp_g15475 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.08 OrthoFinder output from all 47 species
Nbi_g03226 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Ore_g37217 SDG2, ATXR3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37849 SDG2, ATXR3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41517 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Pir_g65975 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g02428 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008756 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Sam_g17455 No alias class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Sam_g41986 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo432361 SDG2, ATXR3 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Smo447947 SDG2, ATXR3 Chromatin organisation.histone modifications.histone... 0.09 OrthoFinder output from all 47 species
Solyc07g052940.4.1 SDG2, ATXR3,... class III/Trithorax histone methyltransferase component... 0.12 OrthoFinder output from all 47 species
Spa_g50988 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Tin_g09792 SDG2, ATXR3 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e021659_P001 SDG2, ATXR3,... class III/Trithorax histone methyltransferase component... 0.18 OrthoFinder output from all 47 species
Zm00001e039942_P003 SDG2, ATXR3,... class III/Trithorax histone methyltransferase component... 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 442 510
No external refs found!