Aliases : LOC_Os08g07790
Description : mCSF mitochondrial RNA splicing factor
Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os08g07790.1 | |
Cluster | HCCA: Cluster_150 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00056p00043140 | ATCAF1, CAF1,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g054906 | ATCAF1, CAF1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g63274 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0092.g042968 | ATCAF1, CAF1 | not classified & original description: CDS=244-1770 | 0.02 | OrthoFinder output from all 47 species | |
Cba_g06914 | CAF2, ATCAF2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.14G027700.1 | Ceric.14G027700 | not classified & original description: pacid=50634377... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.17G046000.1 | ATCAF1, CAF1,... | not classified & original description: pacid=50617225... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g20587 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g19169 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01027582001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
Gb_31131 | No alias | CRS2-associated factor 1, mitochondrial OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Gb_32774 | CAF2, ATCAF2 | CRS2-associated factor 2, chloroplastic OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
Len_g22390 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g05287 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g091940.3.1 | Solyc01g091940 | mCSF mitochondrial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species | |
Tin_g12704 | ATCAF1, CAF1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | HCCA |
MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | HCCA |
MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | HCCA |
BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | HCCA |
BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | HCCA |
BP | GO:0009112 | nucleobase metabolic process | IEP | HCCA |
BP | GO:0009116 | nucleoside metabolic process | IEP | HCCA |
MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | HCCA |
MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016829 | lyase activity | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | HCCA |
BP | GO:0046112 | nucleobase biosynthetic process | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | HCCA |
No external refs found! |