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  5. LOC_Os08g05780.1

LOC_Os08g05780.1 (LOC_Os08g05780)


Aliases : LOC_Os08g05780

Description : no hits & (original description: none)


Gene families : OG0000548 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g05780.1
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00255400 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Aob_g32236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0359.g066863 No alias not classified & original description: CDS=223-915 0.03 OrthoFinder output from all 47 species
Dac_g16240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030175001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_09348 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g17245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_788969g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g01736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31363 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g17222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g39352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19553 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g080000.1.1 Solyc03g080000 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e020142_P001 Zm00001e020142 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR006747 DUF599 12 231
No external refs found!