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  5. LOC_Os08g04540.1

LOC_Os08g04540.1 (LOC_Os08g04540)


Aliases : LOC_Os08g04540

Description : aromatic L-amino acid decarboxylase


Gene families : OG0003989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g04540.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00139650 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.05 OrthoFinder output from all 47 species
AMTR_s00024p00231980 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.06 OrthoFinder output from all 47 species
AMTR_s00092p00055440 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.06 OrthoFinder output from all 47 species
AMTR_s00092p00059730 evm_27.TU.AmTr_v1... Secondary metabolism.nitrogen-containing secondary... 0.05 OrthoFinder output from all 47 species
LOC_Os05g43510.1 LOC_Os05g43510 aromatic L-amino acid decarboxylase 0.05 OrthoFinder output from all 47 species
LOC_Os10g23900.1 LOC_Os10g23900 aromatic L-amino acid decarboxylase 0.06 OrthoFinder output from all 47 species
Mp7g06530.1 No alias aromatic L-amino acid decarboxylase 0.04 OrthoFinder output from all 47 species
Solyc03g045020.4.1 Solyc03g045020 aromatic L-amino acid decarboxylase 0.03 OrthoFinder output from all 47 species
Zm00001e000632_P001 Zm00001e000632 aromatic L-amino acid decarboxylase 0.1 OrthoFinder output from all 47 species
Zm00001e000634_P001 Zm00001e000634 aromatic L-amino acid decarboxylase 0.07 OrthoFinder output from all 47 species
Zm00001e021101_P001 Zm00001e021101 aromatic L-amino acid decarboxylase 0.09 OrthoFinder output from all 47 species
Zm00001e040288_P001 Zm00001e040288 aromatic L-amino acid decarboxylase 0.08 OrthoFinder output from all 47 species
Zm00001e040289_P001 Zm00001e040289 aromatic L-amino acid decarboxylase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016831 carboxy-lyase activity IEA Interproscan
BP GO:0019752 carboxylic acid metabolic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002129 PyrdxlP-dep_de-COase 59 440
No external refs found!