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  5. LOC_Os08g04280.1

LOC_Os08g04280.1 (ARP4, ATARP4, LOC_Os08g04280)


Aliases : ARP4, ATARP4, LOC_Os08g04280

Description : component ARP4 of SWR1 chromatin remodeling complex


Gene families : OG0003946 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003946_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g04280.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g019182 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Aop_g01735 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Cba_g01078 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Ceric.31G013900.1 ARP4, ATARP4,... component *(ARP4) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g02646 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.04 OrthoFinder output from all 47 species
Dde_g04341 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Dde_g05817 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Gb_30963 ARP4, ATARP4 component ARP4 of SWR1 chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Lfl_g06566 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
MA_47927g0020 ARP4, ATARP4 Actin-related protein 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_553393g0010 ARP4A, ATARP4A Actin-related protein 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp8g08600.1 ARP4, ATARP4 component ARP4 of SWR1 chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Nbi_g08168 ARP4, ATARP4 component *(ARP4) of SWR1 chromatin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Sam_g11733 No alias component *(ARP4) of SWR1 chromatin remodeling complex &... 0.03 OrthoFinder output from all 47 species
Solyc12g037980.2.1 ARP4, ATARP4,... component ARP4 of SWR1 chromatin remodeling complex 0.06 OrthoFinder output from all 47 species
Tin_g04562 ARP4, ATARP4 component *(ARP4) of SWR1 chromaTin remodeling complex &... 0.02 OrthoFinder output from all 47 species
Tin_g05055 ARP4, ATARP4 component *(ARP4) of SWR1 chromaTin remodeling complex &... 0.06 OrthoFinder output from all 47 species
Zm00001e000084_P002 ARP4, ATARP4,... component ARP4 of SWR1 chromatin remodeling complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004000 Actin 4 409
No external refs found!