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  5. LOC_Os08g04180.1

LOC_Os08g04180.1 (TSB2, LOC_Os08g04180)


Aliases : TSB2, LOC_Os08g04180

Description : subunit beta of tryptophan synthase complex


Gene families : OG0002978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002978_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g04180.1

Target Alias Description ECC score Gene Family Method Actions
AT5G54810 TRP2, TSB1, ATTSB1, TRPB tryptophan synthase beta-subunit 1 0.03 OrthoFinder output from all 47 species
Aop_g69298 TSB2 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cre03.g161400 TRP2, TSB1, ATTSB1, TRPB Amino acid metabolism.biosynthesis.shikimate... 0.01 OrthoFinder output from all 47 species
Dac_g30442 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g12300.1 TRP2, TSB1, ATTSB1, TRPB subunit beta of tryptophan synthase complex 0.02 OrthoFinder output from all 47 species
Nbi_g39541 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006798 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: CDS=1-1467 0.03 OrthoFinder output from all 47 species
Solyc10g018390.3.1 Solyc10g018390 Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.04 OrthoFinder output from all 47 species
Spa_g10445 TSB2 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50543 TRP2, TSB1, ATTSB1, TRPB EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040313_P001 TRP2, TSB1,... subunit beta of tryptophan synthase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004834 tryptophan synthase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001926 TrpB-like_PALP 126 456
No external refs found!