LOC_Os08g01840.1 (LOC_Os08g01840)

Aliases : LOC_Os08g01840

Description : pre-mRNA splicing factor (SPF30)

Gene families : OG0003854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003854_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g01840.1
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AT2G02570	No alias	nucleic acid binding;RNA binding	0.03	OrthoFinder output from all 47 species
Adi_g014321	No alias	scaffold component of spliceosomal snRNP assembly...	0.03	OrthoFinder output from all 47 species
Adi_g115385	No alias	scaffold component of spliceosomal snRNP assembly...	0.02	OrthoFinder output from all 47 species
Als_g47565	No alias	scaffold component of spliceosomal snRNP assembly...	0.02	OrthoFinder output from all 47 species
Ceric.08G067100.1	Ceric.08G067100	scaffold component of spliceosomal snRNP assembly...	0.02	OrthoFinder output from all 47 species
Cre02.g106550	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
GSVIVT01023145001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.04	OrthoFinder output from all 47 species
Len_g11969	No alias	scaffold component of spliceosomal snRNP assembly...	0.03	OrthoFinder output from all 47 species
Sam_g39182	No alias	scaffold component of spliceosomal snRNP assembly...	0.02	OrthoFinder output from all 47 species
Smo91379	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.02	OrthoFinder output from all 47 species
Tin_g03142	No alias	scaffold component of spliceosomal snRNP assembly...	0.03	OrthoFinder output from all 47 species
Zm00001e021874_P004	Zm00001e021874	pre-mRNA splicing factor (SPF30)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010304	SMN_Tudor	94	163

External Links

No external refs found!

LOC_Os08g01840.1 (LOC_Os08g01840)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation