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  5. LOC_Os08g01680.1

LOC_Os08g01680.1 (NFB01, NFB1, MUB3.9,...)


Aliases : NFB01, NFB1, MUB3.9, FAS2, LOC_Os08g01680

Description : component CAF1b/FAS2 of CAF1 histone chaperone complex


Gene families : OG0006619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01680.1

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020629.12 NFB01, NFB1, MUB3.9, FAS2 Chromatin assembly factor 1 subunit FAS2 homolog... 0.02 OrthoFinder output from all 47 species
Dac_g43644 NFB01, NFB1, MUB3.9, FAS2 component *(CAF1b/FAS2) of CAF1 histone chaperone... 0.03 OrthoFinder output from all 47 species
Gb_06025 NFB01, NFB1, MUB3.9, FAS2 component CAF1b/FAS2 of CAF1 histone chaperone complex 0.04 OrthoFinder output from all 47 species
Len_g36215 NFB01, NFB1, MUB3.9, FAS2 component *(CAF1b/FAS2) of CAF1 histone chaperone... 0.05 OrthoFinder output from all 47 species
MA_6422g0020 NFB01, NFB1, MUB3.9, FAS2 component CAF1b/FAS2 of CAF1 histone chaperone complex 0.08 OrthoFinder output from all 47 species
Mp4g02980.1 NFB01, NFB1, MUB3.9, FAS2 component CAF1b/FAS2 of CAF1 histone chaperone complex 0.09 OrthoFinder output from all 47 species
Nbi_g23632 NFB01, NFB1, MUB3.9, FAS2 component *(CAF1b/FAS2) of CAF1 histone chaperone... 0.05 OrthoFinder output from all 47 species
Sam_g45176 No alias component *(CAF1b/FAS2) of CAF1 histone chaperone... 0.02 OrthoFinder output from all 47 species
Spa_g51583 NFB01, NFB1, MUB3.9, FAS2 component *(CAF1b/FAS2) of CAF1 histone chaperone... 0.06 OrthoFinder output from all 47 species
Tin_g19739 NFB01, NFB1, MUB3.9, FAS2 component *(CAF1b/FAS2) of CAF1 histone chaperone... 0.03 OrthoFinder output from all 47 species
Zm00001e029144_P001 NFB01, NFB1,... component CAF1b/FAS2 of CAF1 histone chaperone complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030150 protein import into mitochondrial matrix IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1990542 mitochondrial transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 103 140
IPR001680 WD40_repeat 11 40
IPR001680 WD40_repeat 145 181
IPR001680 WD40_repeat 338 363
IPR001680 WD40_repeat 59 92
No external refs found!