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  5. LOC_Os07g48360.1

LOC_Os07g48360.1 (MED34, ATRECQ2,...)


Aliases : MED34, ATRECQ2, RECQL2, LOC_Os07g48360

Description : Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana (sp|q9ft73|med34_arath : 305.0)


Gene families : OG0007173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g48360.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00186260 ATRECQ4A,... ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
Ceric.18G010900.1 MED34, ATRECQ2,... not classified & original description: pacid=50621519... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.28 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g490150 RecQl3, ATRECQ3 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g07467 ATRECQ4A, ATSGS1, RECQ4A not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024519001 MED34, ATRECQ2, RECQL2 Mediator of RNA polymerase II transcription subunit 34... 0.03 OrthoFinder output from all 47 species
Len_g20646 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427638g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10429752g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g06135 MED34, ATRECQ2, RECQL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035873_P003 MED34, ATRECQ2,... ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
MF GO:0043138 3'-5' DNA helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR002121 HRDC_dom 546 611
IPR018982 RQC_domain 400 496
IPR011545 DEAD/DEAH_box_helicase_dom 16 175
IPR001650 Helicase_C 218 322
IPR032284 RecQ_Zn-bd 336 395
IPR029491 Helicase_HTH 654 747
No external refs found!