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  5. LOC_Os07g41160.1

LOC_Os07g41160.1 (AFP3, LOC_Os07g41160)


Aliases : AFP3, LOC_Os07g41160

Description : transcriptional co-repressor (AFP/NINJA)


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g41160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00255370 AFP3,... RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
AT1G69260 AFP1 ABI five binding protein 0.1 OrthoFinder output from all 47 species
AT3G29575 AFP3 ABI five binding protein 3 0.07 OrthoFinder output from all 47 species
Aev_g35216 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Aop_g06174 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Cba_g34419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01983 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22899 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07044 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003927001 No alias RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
GSVIVT01008104001 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
GSVIVT01012225001 AFP2 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
Gb_07890 AFP3 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Len_g09615 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16334 NINJA not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_16384g0010 AFP3 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species
MA_2575g0010 AFP3 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Msp_g20542 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g37601 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25344 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g50193 AFP2 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g32749 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo446487 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.04 OrthoFinder output from all 47 species
Solyc02g066905.1.1 AFP2, Solyc02g066905 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species
Solyc04g005380.3.1 AFP2, Solyc04g005380 transcriptional co-repressor (AFP/NINJA) 0.04 OrthoFinder output from all 47 species
Spa_g07383 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14832 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.02 OrthoFinder output from all 47 species
Tin_g31839 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e035495_P001 AFP3, Zm00001e035495 transcriptional co-repressor (AFP/NINJA) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012463 Ninja_motif 28 66
IPR032310 NINJA_B 92 135
IPR032308 TDBD 243 310
No external refs found!