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  5. LOC_Os07g40700.2

LOC_Os07g40700.2 (LOC_Os07g40700)


Aliases : LOC_Os07g40700

Description : no hits & (original description: none)


Gene families : OG0005066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005066_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g40700.2

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.94 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000821.22 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g10875 No alias TrmH-type tRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g31539 No alias TrmH-type tRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11100 No alias TrmH-type tRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018452 No alias TrmH-type tRNA methyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g26912 No alias TrmH-type tRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g088540.3.1 Solyc02g088540 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0008173 RNA methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR001537 SpoU_MeTrfase 147 288
No external refs found!