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  5. LOC_Os07g27320.1

LOC_Os07g27320.1 (LOC_Os07g27320)


Aliases : LOC_Os07g27320

Description : endo-beta-1,4-xylanase


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g27320.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00056140 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AT1G58370 ATXYN1, RXF12 glycosyl hydrolase family 10 protein /... 0.01 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.02 OrthoFinder output from all 47 species
AT4G33810 No alias Glycosyl hydrolase superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33840 No alias Glycosyl hydrolase family 10 protein 0.01 OrthoFinder output from all 47 species
Aspi01Gene08622.t1 Aspi01Gene08622 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07130 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_13086 ATXYN1, RXF12 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os01g04300.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
LOC_Os05g23924.1 LOC_Os05g23924 no description available(sp|q84wt5|xyn5l_arath : 299.0) 0.04 OrthoFinder output from all 47 species
Solyc01g106990.2.1 Solyc01g106990 no description available(sp|q84wt5|xyn5l_arath : 338.0) 0.01 OrthoFinder output from all 47 species
Solyc05g051260.3.1 Solyc05g051260 no description available(sp|q84wt5|xyn5l_arath : 344.0) 0.01 OrthoFinder output from all 47 species
Solyc10g055370.2.1 Solyc10g055370 no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0) 0.01 OrthoFinder output from all 47 species
Spa_g04413 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001013_P003 Zm00001e001013 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.03 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003305 CenC_carb-bd 391 524
IPR003305 CenC_carb-bd 558 699
IPR003305 CenC_carb-bd 220 358
IPR003305 CenC_carb-bd 51 189
IPR001000 GH10_dom 758 1015
No external refs found!