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  5. LOC_Os07g27300.2

LOC_Os07g27300.2 (LOC_Os07g27300)


Aliases : LOC_Os07g27300

Description : pre-mRNA-processing protein (LUC7)


Gene families : OG0003288 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003288_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g27300.2
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT5G51410 No alias LUC7 N_terminus domain-containing protein 0.06 OrthoFinder output from all 47 species
Adi_g043401 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02316 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07158 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12469 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g40184 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018660001 No alias No description available 0.02 OrthoFinder output from all 47 species
Mp2g06220.1 No alias pre-mRNA-processing protein (LUC7) 0.06 OrthoFinder output from all 47 species
Pir_g32313 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02733 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.04 OrthoFinder output from all 47 species
Smo149618 No alias No description available 0.04 OrthoFinder output from all 47 species
Spa_g21308 No alias pre-mRNA-processing protein *(LUC7) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033431_P001 Zm00001e033431 pre-mRNA-processing protein (LUC7) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA Interproscan
CC GO:0005685 U1 snRNP IEA Interproscan
BP GO:0006376 mRNA splice site selection IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR004882 Luc7-rel 2 247
No external refs found!