LOC_Os07g22400.2 (LOC_Os07g22400)

Aliases : LOC_Os07g22400

Description : primase component POLA3 of DNA polymerase alpha complex

Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g22400.2
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AT1G67320	No alias	DNA primase, large subunit family	0.08	OrthoFinder output from all 47 species
Als_g00918	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Aop_g06919	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Azfi_s0242.g059810	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.11	OrthoFinder output from all 47 species
Ceric.22G004000.1	Ceric.22G004000	primase component *(POLA3) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.68	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.09	OrthoFinder output from all 47 species
Cre06.g293000	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.09	OrthoFinder output from all 47 species
Dac_g13828	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.09	OrthoFinder output from all 47 species
Dcu_g14762	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.12	OrthoFinder output from all 47 species
Ehy_g19206	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
GSVIVT01029087001	No alias	Cell cycle.interphase.DNA replication.elongation.DNA...	0.07	OrthoFinder output from all 47 species
Gb_25310	No alias	Probable DNA primase large subunit OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species
Gb_25312	No alias	primase component POLA3 of DNA polymerase alpha complex	0.11	OrthoFinder output from all 47 species
MA_99205g0020	No alias	primase component POLA3 of DNA polymerase alpha complex	0.12	OrthoFinder output from all 47 species
Mp7g17480.1	No alias	primase component POLA3 of DNA polymerase alpha complex	0.1	OrthoFinder output from all 47 species
Msp_g07837	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.08	OrthoFinder output from all 47 species
Nbi_g10404	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Ppi_g63485	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015210	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.06	OrthoFinder output from all 47 species
Sam_g38827	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.02	OrthoFinder output from all 47 species
Solyc04g045530.4.1	Solyc04g045530	primase component POLA3 of DNA polymerase alpha complex	0.03	OrthoFinder output from all 47 species
Spa_g08160	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Tin_g10410	No alias	primase component *(POLA3) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Zm00001e039405_P003	Zm00001e039405	primase component POLA3 of DNA polymerase alpha complex	0.06	OrthoFinder output from all 47 species
Zm00001e040751_P005	Zm00001e040751	primase component POLA3 of DNA polymerase alpha complex	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000776	kinetochore	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0031262	Ndc80 complex	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0043462	regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051095	regulation of helicase activity	IEP	HCCA
BP	GO:0051097	negative regulation of helicase activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905774	regulation of DNA helicase activity	IEP	HCCA
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007238	DNA_primase_lsu_euk/arc	178	443

External Links

No external refs found!

LOC_Os07g22400.2 (LOC_Os07g22400)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation