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  5. LOC_Os07g19460.1

LOC_Os07g19460.1 (SAMT1, SAMC1, LOC_Os07g19460)


Aliases : SAMT1, SAMC1, LOC_Os07g19460

Description : solute transporter (MTCC)


Gene families : OG0003529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g19460.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G34065 SAMC2 S-adenosylmethionine carrier 2 0.03 OrthoFinder output from all 47 species
Als_g33486 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001000.21 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001415.3 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021012.17 SAMT1, SAMC1 Solute transport.carrier-mediated transport.MC-type... 0.01 OrthoFinder output from all 47 species
Nbi_g18808 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08280 SAMT1, SAMC1 solute transporter *(MTCC) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021315 SAMT1, SAMC1 solute transporter *(MTCC) & original description: CDS=107-1153 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018108 Mitochondrial_sb/sol_carrier 190 275
IPR018108 Mitochondrial_sb/sol_carrier 95 175
IPR018108 Mitochondrial_sb/sol_carrier 17 89
No external refs found!