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  5. LOC_Os07g18050.1

LOC_Os07g18050.1 (LOC_Os07g18050)


Aliases : LOC_Os07g18050

Description : C3H zinc finger transcription factor. component MAC5 of non-snRNP MOS4-associated complex


Gene families : OG0002868 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g18050.1

Target Alias Description ECC score Gene Family Method Actions
Als_g59176 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Cba_g01090 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.05 OrthoFinder output from all 47 species
Ceric.38G063300.1 Ceric.38G063300 component *(MAC5) of non-snRNP MOS4-associated complex &... 0.08 OrthoFinder output from all 47 species
Cre02.g075650 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Dde_g14759 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Gb_38162 No alias C3H zinc finger transcription factor. component MAC5 of... 0.04 OrthoFinder output from all 47 species
Len_g05505 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Mp1g00530.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.03 OrthoFinder output from all 47 species
Nbi_g14693 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.03 OrthoFinder output from all 47 species
Solyc04g017710.3.1 Solyc04g017710 C3H zinc finger transcription factor. component MAC5 of... 0.03 OrthoFinder output from all 47 species
Solyc10g079190.3.1 Solyc10g079190 C3H zinc finger transcription factor. component MAC5 of... 0.03 OrthoFinder output from all 47 species
Spa_g19304 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Spa_g57287 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e036386_P001 Zm00001e036386 C3H zinc finger transcription factor. component MAC5 of... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032297 Torus 141 194
IPR000504 RRM_dom 230 287
No external refs found!