LOC_Os07g13530.1 (LOC_Os07g13530)

Aliases : LOC_Os07g13530

Description : E-class RAB GTPase

Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g13530.1
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00168p00058210	evm_27.TU.AmTr_v1...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Adi_g004291	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g100850	ATRABE1C,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g117529	ATRABE1C,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g30318	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g03105	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0125.g048540	ATRABE1C,...	E-class RAB GTPase & original description: CDS=167-790	0.02	OrthoFinder output from all 47 species
Cba_g07305	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g14771	ATRABE1C,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.30	ATRABE1C,...	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
Cre15.g641800	ATRABE1D,...	GTP-binding protein yptV2 OS=Volvox carteri	0.04	OrthoFinder output from all 47 species
Dcu_g37268	ATRABE1C,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09631	No alias	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016596001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.04	OrthoFinder output from all 47 species
GSVIVT01025028001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.07	OrthoFinder output from all 47 species
Len_g16013	ATRABE1D,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g05932	ATRABE1D,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g12190	ATRABE1D,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g08232	ATRABE1D,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25496	ATRABE1D,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c16_17470V3.1	ATRABE1C,...	RAB GTPase homolog 8A	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010582	ATRABE1C,...	not classified & original description: CDS=1-537	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011564	ATRABE1C,...	not classified & original description: CDS=148-741	0.02	OrthoFinder output from all 47 species
Zm00001e033170_P001	ATRABE1C,...	E-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	178

External Links

No external refs found!

LOC_Os07g13530.1 (LOC_Os07g13530)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation