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  5. LOC_Os07g10390.1

LOC_Os07g10390.1 (LOC_Os07g10390)


Aliases : LOC_Os07g10390

Description : DNA damage-binding protein 1a OS=Arabidopsis thaliana (sp|q9m0v3|ddb1a_arath : 123.0)


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g10390.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g008160 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07804 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.37G065800.1 Ceric.37G065800 not classified & original description: pacid=50615955... 0.04 OrthoFinder output from all 47 species
Dac_g20541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033428001 No alias Spliceosome-associated protein 130 A OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62455 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017149 No alias not classified & original description: CDS=63-4370 0.03 OrthoFinder output from all 47 species
Tin_g05247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 666 915
No external refs found!