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  5. LOC_Os07g08330.1

LOC_Os07g08330.1 (LOC_Os07g08330)


Aliases : LOC_Os07g08330

Description : component RPL4 of LSU proteome component


Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g08330.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00210590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
AMTR_s00105p00023120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AT3G09630 No alias Ribosomal protein L4/L1 family 0.25 OrthoFinder output from all 47 species
AT5G02870 No alias Ribosomal protein L4/L1 family 0.31 OrthoFinder output from all 47 species
Adi_g098159 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g04598 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g04140 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Als_g12096 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g19062 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aob_g11621 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g12528 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Aspi01Gene66463.t1 Aspi01Gene66463 component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g00851 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.07G041200.1 Ceric.07G041200 component *(uL4) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ceric.18G033500.1 Ceric.18G033500 component *(uL4) of large ribosomal-subunit (LSU)... 0.22 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.53 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Cre09.g397697 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Dac_g17142 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g06226 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g25869 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dde_g12036 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01025547001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Gb_00290 No alias component RPL4 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Gb_21885 No alias component RPL4 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Len_g18811 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Len_g22033 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g03904 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g29160 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_9991417g0010 No alias component RPL4 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Msp_g01521 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Nbi_g16964 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Ore_g14115 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g17839 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c23_9380V3.1 Pp3c23_9380 Ribosomal protein L4/L1 family 0.03 OrthoFinder output from all 47 species
Ppi_g08865 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000223 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008375 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g13131 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g13132 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Sam_g25486 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Solyc09g007250.4.1 Solyc09g007250 component RPL4 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Solyc10g084350.2.1 Solyc10g084350 component RPL4 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Solyc10g086010.2.1 Solyc10g086010 component RPL4 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Spa_g04220 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.19 OrthoFinder output from all 47 species
Spa_g32778 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g43372 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Tin_g14297 No alias component *(uL4) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Zm00001e005988_P001 Zm00001e005988 component RPL4 of LSU proteome component 0.32 OrthoFinder output from all 47 species
Zm00001e011456_P002 Zm00001e011456 component RPL4 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Zm00001e011869_P001 Zm00001e011869 component RPL4 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Zm00001e032938_P001 Zm00001e032938 component RPL4 of LSU proteome component 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 28 267
IPR025755 Ribos_L4_C_dom 280 352
No external refs found!