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  5. LOC_Os07g04240.1

LOC_Os07g04240.1 (SDH1-1, LOC_Os07g04240)


Aliases : SDH1-1, LOC_Os07g04240

Description : flavoprotein component SDH1 of succinate dehydrogenase complex


Gene families : OG0003596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g04240.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00054360 SDH1-1,... Cellular respiration.tricarboxylic acid cycle.succinate... 0.06 OrthoFinder output from all 47 species
Aev_g12388 SDH1-1 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.03 OrthoFinder output from all 47 species
Aob_g05983 SDH1-1 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.02 OrthoFinder output from all 47 species
Ceric.28G019200.1 SDH1-1, Ceric.28G019200 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.1 OrthoFinder output from all 47 species
Dac_g09898 SDH1-1 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.03 OrthoFinder output from all 47 species
Dde_g08253 SDH1-1 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.03 OrthoFinder output from all 47 species
GSVIVT01018976001 SDH1-1 Cellular respiration.tricarboxylic acid cycle.succinate... 0.04 OrthoFinder output from all 47 species
MA_10427069g0010 SDH1-1 flavoprotein component SDH1 of succinate dehydrogenase complex 0.02 OrthoFinder output from all 47 species
MA_119336g0010 SDH1-1 flavoprotein component SDH1 of succinate dehydrogenase complex 0.03 OrthoFinder output from all 47 species
MA_20247g0020 SDH1-2 Succinate dehydrogenase [ubiquinone] flavoprotein... 0.03 OrthoFinder output from all 47 species
Pir_g09616 SDH1-1 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.03 OrthoFinder output from all 47 species
Smo440964 SDH1-1 Cellular respiration.tricarboxylic acid cycle.succinate... 0.04 OrthoFinder output from all 47 species
Spa_g09084 SDH1-1 EC_1.3 oxidoreductase acting on CH-CH group of donor &... 0.03 OrthoFinder output from all 47 species
Tin_g16793 SDH1-1 EC_1.3 oxidoreductase acTing on CH-CH group of donor &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003953 FAD-binding_2 47 443
IPR015939 Fum_Rdtase/Succ_DH_flav-like_C 498 630
No external refs found!