LOC_Os07g03770.1 (BP, BP1, KNAT1, LOC_Os07g03770)

Aliases : BP, BP1, KNAT1, LOC_Os07g03770

Description : transcription factor (KNOX)

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g03770.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00264520	KNAT7, IXR11,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AMTR_s00023p00178300	KNAT7, IXR11,...	Homeobox protein HD1 OS=Brassica napus	0.03	OrthoFinder output from all 47 species
AMTR_s00026p00162850	KNAT3,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
AMTR_s00085p00165180	KNAT6, KNAT6L,...	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
AT1G62360	BUM1, SHL, STM,...	KNOX/ELK homeobox transcription factor	0.03	OrthoFinder output from all 47 species
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.09	OrthoFinder output from all 47 species
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.08	OrthoFinder output from all 47 species
AT5G11060	KNAT4	KNOTTED1-like homeobox gene 4	0.03	OrthoFinder output from all 47 species
AT5G25220	KNAT3	KNOTTED1-like homeobox gene 3	0.05	OrthoFinder output from all 47 species
Adi_g098728	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g13164	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g08926	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g27530	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g70104	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000431	KNAT7, IXR11	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009595	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: CDS=1-1050	0.03	OrthoFinder output from all 47 species
Azfi_s2491.g111832	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: CDS=16-543	0.04	OrthoFinder output from all 47 species
Cba_g05791	BP, BP1, KNAT1	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g30662	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.04G064800.1	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.13G020400.1	KNAT3, Ceric.13G020400	KNOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g03334	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g06220	KNAT7, IXR11	KNOX-type transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Dcu_g28016	KNAT3	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07800	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g30696	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01004811001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01007715001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01013790001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01018257001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01030488001	BUM1, SHL, STM,...	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01031241001	KNAT6, KNAT6L, KNAT6S	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os01g19694.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
LOC_Os08g19650.1	KNAT3, LOC_Os08g19650	transcription factor (KNOX)	0.07	OrthoFinder output from all 47 species
Len_g00731	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_3582g0010	KNAT3	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Ore_g07720	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19225	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g29053	KNAT3	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c5_26440V3.1	KNAT3, Pp3c5_26440	KNOTTED1-like homeobox gene 3	0.01	OrthoFinder output from all 47 species
Ppi_g10499	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15325	KNAT4	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019792	KNAT7, IXR11	not classified & original description: CDS=1-462	0.02	OrthoFinder output from all 47 species
Sam_g23106	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo135843	KNAT4	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
Solyc01g100510.4.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.05	OrthoFinder output from all 47 species
Solyc04g077210.3.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.07	OrthoFinder output from all 47 species
Solyc05g005090.4.1	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.07	OrthoFinder output from all 47 species
Solyc08g080120.3.1	KNAT7, IXR11,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Solyc12g010410.3.1	KNAT4, Solyc12g010410	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Spa_g56194	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g12897	KNAT3	KNOX-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g30670	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000173_P003	KNAT7, IXR11,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e005170_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species
Zm00001e005545_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.05	OrthoFinder output from all 47 species
Zm00001e005547_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.07	OrthoFinder output from all 47 species
Zm00001e005825_P002	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.12	OrthoFinder output from all 47 species
Zm00001e012293_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Zm00001e027562_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Zm00001e029453_P001	KNAT6, KNAT6L,...	transcription factor (KNOX)	0.09	OrthoFinder output from all 47 species
Zm00001e032761_P001	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.04	OrthoFinder output from all 47 species
Zm00001e039044_P001	KNAT7, IXR11,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	91	131
IPR008422	Homeobox_KN_domain	276	315
IPR005541	KNOX2	141	185
IPR005539	ELK_dom	236	257

External Links

No external refs found!

LOC_Os07g03770.1 (BP, BP1, KNAT1, LOC_Os07g03770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation