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  5. LOC_Os06g51510.1

LOC_Os06g51510.1 (LOC_Os06g51510)


Aliases : LOC_Os06g51510

Description : light chain of clathrin triskelion


Gene families : OG0002188 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002188_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g51510.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00237540 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
AT2G20760 No alias Clathrin light chain protein 0.09 OrthoFinder output from all 47 species
Adi_g109698 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20138 No alias light chain of clathrin triskelion & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g24594 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37421 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10177 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06151 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08248 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Als_g35047 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Als_g44342 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06413 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00585 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G039600.1 Ceric.36G039600 light chain of clathrin triskelion & original... 0.03 OrthoFinder output from all 47 species
Dcu_g07971 No alias light chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01033974001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Len_g12357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17514 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23497 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30485 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05463 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Mp2g03080.1 No alias light chain of clathrin triskelion 0.04 OrthoFinder output from all 47 species
Msp_g03939 No alias light chain of clathrin triskelion & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02810 No alias light chain of clathrin triskelion & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g16953 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07780 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09854 No alias light chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g078540.4.1 Solyc02g078540 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g04777 No alias light chain of clathrin triskelion & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g02607 No alias light chain of clathrin triskelion & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000996 Clathrin_L-chain 90 227
No external refs found!