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  5. LOC_Os06g48750.2

LOC_Os06g48750.2 (EIF4A-2, LOC_Os06g48750)


Aliases : EIF4A-2, LOC_Os06g48750

Description : mRNA unwinding factor (eIF4A)


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os06g48750.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00116790 EIF4A-2,... Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
AT1G54270 EIF4A-2 eif4a-2 0.04 OrthoFinder output from all 47 species
Aev_g10607 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05564 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07229 EIF4A-2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12113 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Als_g20425 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40134 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Aop_g03471 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13177 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02459.t1 Aspi01Gene02459 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0010.g012425 No alias not classified & original description: CDS=200-1144 0.05 OrthoFinder output from all 47 species
Cba_g12127 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20199 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Cre06.g298650 EIF4A-2 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
Dac_g29865 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Dde_g43100 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036113001 EIF4A-III Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia 0.02 OrthoFinder output from all 47 species
Gb_24110 EIF4A-III helicase component eIF4A3 of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Lfl_g03950 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Lfl_g23612 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g29402 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g02760.1 EIF4A-2 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species
Msp_g12910 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00671 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.04 OrthoFinder output from all 47 species
Pp3s93_30V3.1 EIF4A-2, Pp3s93_30 eukaryotic translation initiation factor 4A1 0.01 OrthoFinder output from all 47 species
Ppi_g03000 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.04 OrthoFinder output from all 47 species
Ppi_g15917 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013253 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g35004 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g096000.2.1 EIF4A-2, Solyc12g096000 mRNA unwinding factor (eIF4A) 0.03 OrthoFinder output from all 47 species
Spa_g05950 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40551 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Tin_g03932 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05567 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013175_P002 EIF4A-2, Zm00001e013175 mRNA unwinding factor (eIF4A) 0.11 OrthoFinder output from all 47 species
Zm00001e016284_P001 EIF4A-III, Zm00001e016284 helicase component eIF4A3 of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Zm00001e030233_P004 EIF4A-2, Zm00001e030233 mRNA unwinding factor (eIF4A) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 66 227
IPR001650 Helicase_C 267 375
No external refs found!