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  5. LOC_Os06g42560.4

LOC_Os06g42560.4 (TSBtype2, LOC_Os06g42560)


Aliases : TSBtype2, LOC_Os06g42560

Description : no hits & (original description: none)


Gene families : OG0004509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g42560.4
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT5G38530 TSBtype2 tryptophan synthase beta type 2 0.03 OrthoFinder output from all 47 species
Ala_g07823 TSBtype2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14711 TSBtype2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02654.t1 TSBtype2, Aspi01Gene02654 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036477001 TSBtype2 Tryptophan synthase beta chain 1, chloroplastic... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013937 TSBtype2 not classified & original description: CDS=422-1984 0.02 OrthoFinder output from all 47 species
Solyc12g096190.2.1 TSBtype2, Solyc12g096190 Tryptophan synthase beta chain 1, chloroplastic... 0.02 OrthoFinder output from all 47 species
Zm00001e037539_P001 TSBtype2, Zm00001e037539 Tryptophan synthase beta chain 1, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001926 TrpB-like_PALP 113 340
No external refs found!