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  5. LOC_Os06g41440.2

LOC_Os06g41440.2 (LOC_Os06g41440)


Aliases : LOC_Os06g41440

Description : RAB-GTPase guanine nucleotide exchange factor (LOT)


Gene families : OG0004880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g41440.2
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Adi_g016386 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.03 OrthoFinder output from all 47 species
Aev_g40452 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.02 OrthoFinder output from all 47 species
Aop_g14176 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.05 OrthoFinder output from all 47 species
Ceric.05G073300.1 Ceric.05G073300 RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.09 OrthoFinder output from all 47 species
Dac_g13384 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.03 OrthoFinder output from all 47 species
Dcu_g01882 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.11 OrthoFinder output from all 47 species
Ehy_g04877 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01012041001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g11573 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.04 OrthoFinder output from all 47 species
Lfl_g02143 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.05 OrthoFinder output from all 47 species
Mp2g13270.1 No alias RAB-GTPase guanine nucleotide exchange factor (LOT) 0.09 OrthoFinder output from all 47 species
Nbi_g01172 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.03 OrthoFinder output from all 47 species
Pir_g09639 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.03 OrthoFinder output from all 47 species
Smo73467 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc11g019960.2.1 Solyc11g019960 RAB-GTPase guanine nucleotide exchange factor (LOT) 0.12 OrthoFinder output from all 47 species
Spa_g11923 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.02 OrthoFinder output from all 47 species
Tin_g07420 No alias RAB-H1 GTPase nucleotide exchange factor *(LOT) &... 0.09 OrthoFinder output from all 47 species
Zm00001e006596_P002 Zm00001e006596 RAB-GTPase guanine nucleotide exchange factor (LOT) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR014848 Rgp1 133 495
No external refs found!