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  5. LOC_Os06g30440.1

LOC_Os06g30440.1 (GH3.17, LOC_Os06g30440)


Aliases : GH3.17, LOC_Os06g30440

Description : Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica (sp|q654m1|gh37_orysj : 1191.0)


Gene families : OG0000376 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g30440.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT4G27260 GH3.5, WES1 Auxin-responsive GH3 family protein 0.02 OrthoFinder output from all 47 species
Adi_g035655 DFL1, GH3.6 jasmonoyl-amino acid synthetase *(JAR1) & original... 0.03 OrthoFinder output from all 47 species
Ala_g04995 DFL1, GH3.6 indole-3-acetic acid-amido synthetase *(GH3) & original... 0.02 OrthoFinder output from all 47 species
Als_g01106 GH3.5, WES1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06626.t1 GH3.5, WES1,... indole-3-acetic acid-amido synthetase *(GH3) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene06627.t1 GH3.5, WES1,... indole-3-acetic acid-amido synthetase *(GH3) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene46181.t1 GH3.5, WES1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20850 DFL1, GH3.6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G002400.1 DFL1, GH3.6,... not classified & original description: pacid=50620356... 0.01 OrthoFinder output from all 47 species
Ceric.06G002600.1 DFL1, GH3.6,... not classified & original description: pacid=50620309... 0.02 OrthoFinder output from all 47 species
Ceric.09G019500.1 DFL1, GH3.6,... not classified & original description: pacid=50588273... 0.03 OrthoFinder output from all 47 species
Ceric.1Z009000.1 DFL1, GH3.6,... not classified & original description: pacid=50632766... 0.02 OrthoFinder output from all 47 species
Dde_g26531 GH3.5, WES1 indole-3-acetic acid-amido synthetase *(GH3) & original... 0.01 OrthoFinder output from all 47 species
Ehy_g30628 DFL1, GH3.6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00287 DFL1, GH3.6 Indole-3-acetic acid-amido synthetase GH3.6... 0.01 OrthoFinder output from all 47 species
Lfl_g28258 DFL1, GH3.6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g28987 DFL1, GH3.6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g30662 GH3.17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g42821 GH3.1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17967 GH3.5, WES1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g25319 GH3.5, WES1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g21865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo235392 DFL1, GH3.6 Indole-3-acetic acid-amido synthetase GH3.6... 0.02 OrthoFinder output from all 47 species
Zm00001e010686_P001 GH3.1, Zm00001e010686 indole-3-acetic acid-amido synthetase 0.02 OrthoFinder output from all 47 species
Zm00001e019720_P002 GH3.1, Zm00001e019720 indole-3-acetic acid-amido synthetase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR004993 GH3 20 590
No external refs found!