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  5. LOC_Os06g16430.1

LOC_Os06g16430.1 (LOC_Os06g16430)


Aliases : LOC_Os06g16430

Description : Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog OS=Arabidopsis thaliana (sp|q9fik2|pp1r8_arath : 88.6)


Gene families : OG0006187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g16430.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT5G38840 No alias SMAD/FHA domain-containing protein 0.09 OrthoFinder output from all 47 species
Aev_g01413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02432 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g13751 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G004800.1 Ceric.23G004800 not classified & original description: pacid=50610285... 0.06 OrthoFinder output from all 47 species
Cre03.g152450 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g38589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036517001 No alias Protein phosphatase 1 regulatory inhibitor subunit... 0.1 OrthoFinder output from all 47 species
Len_g01356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02087 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10429059g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g26674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19021 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15279 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g06347 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e036821_P003 Zm00001e036821 Protein phosphatase 1 regulatory inhibitor subunit... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR000253 FHA_dom 167 234
No external refs found!