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  5. LOC_Os06g13090.1

LOC_Os06g13090.1 (PUB39, LOC_Os06g13090)


Aliases : PUB39, LOC_Os06g13090

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g13090.1
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00240140 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT3G47820 PUB39 PLANT U-BOX 39 0.04 OrthoFinder output from all 47 species
AT5G62560 No alias RING/U-box superfamily protein with ARM repeat domain 0.02 OrthoFinder output from all 47 species
Ala_g10271 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04662 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62638.t1 PUB38, ATPUB38,... U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g57958 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.29G047200.1 PUB39, Ceric.29G047200 U-Box-group-II E3 ubiquitin ligase & original... 0.03 OrthoFinder output from all 47 species
Dcu_g40033 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09631 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03795 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16204 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Gb_13006 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Gb_16859 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e036060_P001 PUB39, Zm00001e036060 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 82
No external refs found!