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  5. LOC_Os06g11860.1

LOC_Os06g11860.1 (RAP2.4, LOC_Os06g11860)


Aliases : RAP2.4, LOC_Os06g11860

Description : transcription factor (DREB)


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g11860.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00095120 ERF110,... Ethylene-responsive transcription factor ERF110... 0.01 OrthoFinder output from all 47 species
AMTR_s00026p00180130 evm_27.TU.AmTr_v1... Ethylene-responsive transcription factor ERF084... 0.01 OrthoFinder output from all 47 species
AMTR_s00040p00195730 DREB1B, ATCBF1,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00077p00141890 CRF3,... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
AMTR_s00099p00039760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 OrthoFinder output from all 47 species
AT1G22190 No alias Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
AT2G35700 ERF38, ATERF38 ERF family protein 38 0.01 OrthoFinder output from all 47 species
AT4G17500 ERF-1, ATERF-1 ethylene responsive element binding factor 1 0.01 OrthoFinder output from all 47 species
Adi_g001941 ATERF4, RAP2.5,... subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Adi_g056297 ERF110 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Als_g10573 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Als_g36562 ATERF8, ATERF-8, ERF8 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Als_g51788 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48933.t1 RAP2.2, Aspi01Gene48933 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Aspi01Gene53903.t1 Aspi01Gene53903 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Cba_g06839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02579 WIN1, SHN1 cutin and suberin biosynthesis transcription factor... 0.01 OrthoFinder output from all 47 species
LOC_Os01g54890.1 ERF-1, ATERF-1,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
LOC_Os01g73770.1 CBF4, DREB1D,... transcription factor (DREB) 0.04 OrthoFinder output from all 47 species
LOC_Os02g52670.1 ERF110, LOC_Os02g52670 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g15660.1 DREB26, LOC_Os03g15660 Ethylene-responsive transcription factor ERF012... 0.02 OrthoFinder output from all 47 species
LOC_Os08g36920.1 RRTF1, LOC_Os08g36920 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
LOC_Os09g13940.2 LOC_Os09g13940 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os10g41330.1 ERF-6-6, ERF6,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_115502g0010 No alias transcription factor (DREB) 0.07 OrthoFinder output from all 47 species
Ppi_g16821 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020572 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Solyc01g090340.3.1 ATERF13, ERF13,... Ethylene-responsive transcription factor 13... 0.04 OrthoFinder output from all 47 species
Solyc03g005500.1.1 ERF14, ATERF14,... transcription factor (ERF). transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc05g050830.3.1 Solyc05g050830 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Solyc08g078180.1.1 ERF2, ATERF2,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Solyc09g066350.1.1 Solyc09g066350 transcription factor (ERF) 0.05 OrthoFinder output from all 47 species
Solyc09g089910.1.1 Solyc09g089910 transcription factor (ERF). transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Zm00001e002789_P001 RAP2.4, Zm00001e002789 transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e003579_P001 Zm00001e003579 Ethylene-responsive transcription factor ERF015... 0.01 OrthoFinder output from all 47 species
Zm00001e006753_P003 RAP2.9, DEAR5,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Zm00001e019567_P001 ATERF4, RAP2.5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Zm00001e027351_P001 ATERF4, RAP2.5,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Zm00001e028920_P001 ATERF4, RAP2.5,... transcription factor (ERF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 183 231
No external refs found!