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  5. LOC_Os06g08400.1

LOC_Os06g08400.1 (LOC_Os06g08400)


Aliases : LOC_Os06g08400

Description : ubiquitin receptor regulatory protein (DA1)


Gene families : OG0000918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000918_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g08400.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT5G66630 DAR5 DA1-related protein 5 0.04 OrthoFinder output from all 47 species
Als_g27755 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72458.t1 Aspi01Gene72458 ubiquitin-dependent protease *(DA1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14700 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04685 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g13279 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g079910.3.1 DAR2, Solyc03g079910 ubiquitin receptor regulatory protein (DA1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR003903 UIM_dom 47 59
IPR003903 UIM_dom 77 90
IPR022087 DA1-like_dom 273 481
IPR001781 Znf_LIM 124 179
No external refs found!