Aliases : LOC_Os06g07580
Description : component RPS30 of SSU proteome
Gene families : OG0002477 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002477_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os06g07580.1 | |
Cluster | HCCA: Cluster_14 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G19750 | No alias | Ribosomal protein S30 family protein | 0.16 | OrthoFinder output from all 47 species | |
AT4G29390 | No alias | Ribosomal protein S30 family protein | 0.19 | OrthoFinder output from all 47 species | |
AT5G56670 | No alias | Ribosomal protein S30 family protein | 0.19 | OrthoFinder output from all 47 species | |
Cba_g65418 | No alias | component *(eS30) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.05G056700.1 | Ceric.05G056700 | component *(eS30) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Cre16.g666301 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01016902001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.07 | OrthoFinder output from all 47 species | |
Gb_16784 | No alias | component RPS30 of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
MA_10432727g0010 | No alias | component RPS30 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Mp2g24290.1 | No alias | component RPS30 of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Mp8g09080.1 | No alias | component RPS30 of SSU proteome | 0.09 | OrthoFinder output from all 47 species | |
Pp3c1_420V3.1 | Pp3c1_420 | Ribosomal protein S30 family protein | 0.03 | OrthoFinder output from all 47 species | |
Pp3c2_28870V3.1 | Pp3c2_28870 | Ribosomal protein S30 family protein | 0.02 | OrthoFinder output from all 47 species | |
Pp3c2_29010V3.1 | Pp3c2_29010 | Ribosomal protein S30 family protein | 0.04 | OrthoFinder output from all 47 species | |
Smo227173 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
Solyc08g076340.3.1 | Solyc08g076340 | component RPS30 of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
Solyc12g008700.3.1 | Solyc12g008700 | component RPS30 of SSU proteome | 0.11 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
CC | GO:0005787 | signal peptidase complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006465 | signal peptide processing | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
CC | GO:0016020 | membrane | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016485 | protein processing | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
CC | GO:0019867 | outer membrane | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
CC | GO:0031968 | organelle outer membrane | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051604 | protein maturation | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
CC | GO:0140534 | endoplasmic reticulum protein-containing complex | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
CC | GO:1905368 | peptidase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006846 | Ribosomal_S30 | 3 | 59 |
No external refs found! |