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  5. LOC_Os06g07080.1

LOC_Os06g07080.1 (EMB33, SUS2, EMB177,...)


Aliases : EMB33, SUS2, EMB177, EMB14, LOC_Os06g07080

Description : protein factor PRPF8/SUS2 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g07080.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00089870 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.11 OrthoFinder output from all 47 species
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.11 OrthoFinder output from all 47 species
Ala_g15277 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.07 OrthoFinder output from all 47 species
Als_g29416 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.07 OrthoFinder output from all 47 species
Aob_g16557 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Aop_g13684 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Cba_g15408 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Ceric.07G006500.1 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.136 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.137 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Cre01.g016050 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Dac_g10090 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
Dcu_g02064 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.06 OrthoFinder output from all 47 species
Dde_g02414 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
GSVIVT01017346001 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.08 OrthoFinder output from all 47 species
Gb_00344 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.1 OrthoFinder output from all 47 species
Len_g05452 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Len_g21117 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Len_g31288 EMB33, SUS2,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g44858 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Lfl_g02476 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
MA_254868g0010 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 8B OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_7388g0020 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.09 OrthoFinder output from all 47 species
Mp1g12380.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Msp_g13516 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Nbi_g04483 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Ore_g37212 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Pir_g09836 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Pnu_g07581 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Ppi_g09482 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004862 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Sam_g18054 No alias protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Sam_g37843 No alias protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Smo173603 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.09 OrthoFinder output from all 47 species
Solyc07g008880.3.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.11 OrthoFinder output from all 47 species
Spa_g12840 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.1 OrthoFinder output from all 47 species
Tin_g07648 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Zm00001e030094_P003 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.09 OrthoFinder output from all 47 species
Zm00001e036397_P001 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 865 963
IPR012984 PROCT 976 1096
IPR021983 PRP8_domainIV 524 753
IPR019580 Prp8_U6-snRNA-bd 206 364
IPR019581 Prp8_U5-snRNA-bd 2 107
No external refs found!