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  5. LOC_Os06g05800.1

LOC_Os06g05800.1 (LOC_Os06g05800)


Aliases : LOC_Os06g05800

Description : no hits & (original description: none)


Gene families : OG0002335 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002335_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g05800.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Adi_g056306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12112 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0174.g055961 No alias not classified & original description: CDS=1-780 0.02 OrthoFinder output from all 47 species
GSVIVT01022075001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g20216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 34 97
IPR000504 RRM_dom 220 281
No external refs found!