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  5. LOC_Os06g02620.1

LOC_Os06g02620.1 (GFA2, LOC_Os06g02620)


Aliases : GFA2, LOC_Os06g02620

Description : co-chaperone (Hsp40)


Gene families : OG0001086 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g02620.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00246570 GFA2,... Chaperone protein dnaJ GFA2, mitochondrial... 0.02 OrthoFinder output from all 47 species
Adi_g059641 GFA2 co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082576 GFA2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031657 GFA2 co-chaperone *(Hsp40) & original description: CDS=1-1614 0.02 OrthoFinder output from all 47 species
Cba_g13445 GFA2 co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17310 GFA2 co-chaperone *(Hsp40) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001384.6 GFA2 Chaperone protein dnaJ GFA2, mitochondrial... 0.01 OrthoFinder output from all 47 species
Dcu_g11133 GFA2 co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11087 GFA2 co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17622 GFA2 co-chaperone *(Hsp40) & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g03970.1 GFA2 co-chaperone (Hsp40) 0.03 OrthoFinder output from all 47 species
Spa_g04488 GFA2 co-chaperone *(Hsp40) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e029856_P003 GFA2, Zm00001e029856 co-chaperone (Hsp40) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0031072 heat shock protein binding IEA Interproscan
MF GO:0051082 unfolded protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 75 137
IPR001305 HSP_DnaJ_Cys-rich_dom 223 283
IPR002939 DnaJ_C 197 409
No external refs found!