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  5. LOC_Os06g01170.1

LOC_Os06g01170.1 (LOC_Os06g01170)


Aliases : LOC_Os06g01170

Description : PHD finger transcription factor


Gene families : OG0002837 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002837_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g01170.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00029580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
AT2G36720 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.05 OrthoFinder output from all 47 species
Adi_g019405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66264.t1 Aspi01Gene66264 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G048800.1 Ceric.36G048800 not classified & original description: pacid=50568689... 0.05 OrthoFinder output from all 47 species
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
GSVIVT01033711001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
Lfl_g03502 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437662 No alias No description available 0.03 OrthoFinder output from all 47 species
Zm00001e013368_P001 Zm00001e013368 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e029784_P001 Zm00001e029784 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 392 456
IPR032308 TDBD 567 637
No external refs found!