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  5. LOC_Os05g50350.1

LOC_Os05g50350.1 (RSM3, ATRL6, RL6,...)


Aliases : RSM3, ATRL6, RL6, LOC_Os05g50350

Description : transcription factor (MYB-related)


Gene families : OG0002893 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002893_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g50350.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00096080 RL1, RSM2,... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AMTR_s00085p00035990 RL5, RSM4,... RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
AT1G75250 RSM3, ATRL6, RL6 RAD-like 6 0.05 OrthoFinder output from all 47 species
AT4G36570 ATRL3, RL3 RAD-like 3 0.02 OrthoFinder output from all 47 species
AT5G23650 No alias Homeodomain-like transcriptional regulator 0.02 OrthoFinder output from all 47 species
GSVIVT01018944001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
GSVIVT01028262001 ATRL4, RL4 RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
LOC_Os02g47744.1 RL5, RSM4,... transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
MA_10432538g0010 RL5, RSM4, ATRL5 transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
Solyc11g071500.3.1 Solyc11g071500 transcription factor (MYB-related) 0.04 OrthoFinder output from all 47 species
Zm00001e001068_P001 RL1, RSM2,... transcription factor (MYB-related) 0.04 OrthoFinder output from all 47 species
Zm00001e026558_P001 Zm00001e026558 transcription factor (MYB-related) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA

No InterPro domains available for this sequence

No external refs found!