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  5. LOC_Os05g49960.1

LOC_Os05g49960.1 (LOC_Os05g49960)


Aliases : LOC_Os05g49960

Description : no hits & (original description: none)


Gene families : OG0003996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003996_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g49960.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00147p00031120 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Ala_g00262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g00247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21454 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08240.t1 Aspi01Gene08240 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15564 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12457 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_141021g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_184149g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g24230.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g23299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004761 No alias not classified & original description: CDS=1-576 0.03 OrthoFinder output from all 47 species
Solyc06g009770.1.1 Solyc06g009770 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc09g075570.1.1 Solyc09g075570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!