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  5. LOC_Os05g46000.1

LOC_Os05g46000.1 (ATRABG3B, RABG3B,...)


Aliases : ATRABG3B, RABG3B, RAB75, RAB7, LOC_Os05g46000

Description : G-class RAB GTPase


Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g46000.1

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene23103.t1 ATRABG3C,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022246001 ATRABG3A, RABG3A Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
MA_301871g0010 ATRABG3C, ATRAB7D, RABG3c Ras-related protein Rab7 OS=Prunus armeniaca... 0.03 OrthoFinder output from all 47 species
MA_84159g0010 AtRABG3d, RABG3d G-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Ore_g37374 AtRABG3d, RABG3d G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12607 ATRABG3C, ATRAB7D, RABG3c G-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19659 No alias G-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21415 ATRABG3B,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29097 ATRABG3B,... G-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 11 177
No external refs found!