LOC_Os05g43780.1 (ESP1, LOC_Os05g43780)


Aliases : ESP1, LOC_Os05g43780

Description : component ESP1 of Cleavage Stimulatory Factor (CstF) complex


Gene families : OG0001642 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001642_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g43780.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00229100 CSTF64,... RNA processing.RNA 3-end polyadenylation.Cleavage... 0.02 OrthoFinder output from all 47 species
AT1G73840 ESP1 hydroxyproline-rich glycoprotein family protein 0.04 OrthoFinder output from all 47 species
Ceric.11G063300.1 ESP1, Ceric.11G063300 component *(ESP1) of Cleavage Stimulatory Factor (CstF)... 0.04 OrthoFinder output from all 47 species
Ceric.32G017200.1 CSTF64, Ceric.32G017200 component *(CstF64/Rna15) of Cleavage Stimulatory Factor... 0.05 OrthoFinder output from all 47 species
Cre01.g024200 CSTF64 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.03 OrthoFinder output from all 47 species
Gb_13366 ESP1 component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.04 OrthoFinder output from all 47 species
Nbi_g07505 ESP1 component *(ESP1) of Cleavage Stimulatory Factor (CstF)... 0.02 OrthoFinder output from all 47 species
Solyc02g069160.3.1 CSTF64, Solyc02g069160 component CstF64/Rna15 of Cleavage Stimulatory Factor... 0.06 OrthoFinder output from all 47 species
Zm00001e032123_P001 ESP1, Zm00001e032123 component ESP1 of Cleavage Stimulatory Factor (CstF) complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR026896 CSTF_C 354 386
IPR025742 CSTF2_hinge 4 67
No external refs found!