LOC_Os05g41172.2 (SUVH1, LOC_Os05g41172)

Aliases : SUVH1, LOC_Os05g41172

Description : class V/Su(var) histone methyltransferase component of histone lysine methylation/demethylation. methylated DNA binding component SUVH1/3 of SUVH-DNAJ methylation reader complex

Gene families : OG0000291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000291_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g41172.2

Target	Alias	Description	ECC score	Gene Family Method
AT5G04940	SUVH1	SU(VAR)3-9 homolog 1	0.05	OrthoFinder output from all 47 species
Adi_g012366	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Adi_g112672	SUVH3, SDG19	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Aev_g06142	SUVH1	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Als_g15923	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Aob_g05317	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Aop_g64195	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene31893.t1	SDG23, SUVH6,...	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cba_g05945	SUVH1	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cba_g38983	SET22, SDG22, SUVH9	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Ceric.02G055100.1	SUVH1, Ceric.02G055100	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Ceric.13G009600.1	SUVH3, SDG19,...	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Ceric.13G012400.1	SDG23, SUVH6,...	not classified & original description: pacid=50636550...	0.03	OrthoFinder output from all 47 species
Ceric.32G043200.1	SUVH1, Ceric.32G043200	EC_2.1 transferase transferring one-carbon group &...	0.05	OrthoFinder output from all 47 species
Ehy_g14200	SUVH1	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
GSVIVT01005913001	SUVH5, SGD9	Chromatin organisation.histone modifications.histone...	0.05	OrthoFinder output from all 47 species
GSVIVT01027942001	ATSUVH2, SDG3, SUVH2	Chromatin organisation.DNA methylation.canonical...	0.04	OrthoFinder output from all 47 species
GSVIVT01032986001	SDG33, SUVH4, KYP	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Lfl_g02390	SUVH3, SDG19	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
MA_790260g0010	SUVH5, SGD9	class V/Su(var) histone methyltransferase component of...	0.03	OrthoFinder output from all 47 species
MA_95753g0010	SDG23, SUVH6	class V/Su(var) histone methyltransferase component of...	0.04	OrthoFinder output from all 47 species
Msp_g12366	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Ore_g17339	SUVH1	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Ore_g19713	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Pir_g11353	SUVH1	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Pir_g45967	SUVH1	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Ppi_g04684	SUVH3, SDG19	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010543	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Sam_g06734	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Solyc09g082050.4.1	SUVH1, Solyc09g082050	class V/Su(var) histone methyltransferase component of...	0.03	OrthoFinder output from all 47 species
Solyc09g090810.3.1	SET22, SDG22,...	class V/Su(var) histone methyltransferase component of...	0.03	OrthoFinder output from all 47 species
Solyc10g077070.2.1	SUVH3, SDG19,...	class V/Su(var) histone methyltransferase component of...	0.04	OrthoFinder output from all 47 species
Tin_g08561	SUVH3, SDG19	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Tin_g09790	SDG23, SUVH6	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Zm00001e007370_P001	SUVH5, SGD9,...	class V/Su(var) histone methyltransferase component of...	0.03	OrthoFinder output from all 47 species
Zm00001e027327_P003	SUVH1, Zm00001e027327	class V/Su(var) histone methyltransferase component of...	0.03	OrthoFinder output from all 47 species
Zm00001e031994_P003	SUVH3, SDG19,...	class V/Su(var) histone methyltransferase component of...	0.07	OrthoFinder output from all 47 species
Zm00001e033130_P002	SUVH3, SDG19,...	class V/Su(var) histone methyltransferase component of...	0.13	OrthoFinder output from all 47 species
Zm00001e033937_P001	Zm00001e033937	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008170	N-methyltransferase activity	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0008276	protein methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016278	lysine N-methyltransferase activity	None	Extended
MF	GO:0016279	protein-lysine N-methyltransferase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	histone lysine N-methyltransferase activity	IEA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034968	histone lysine methylation	IEA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042054	histone methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003105	SRA_YDG	215	367
IPR001214	SET_dom	513	646
IPR007728	Pre-SET_dom	396	494

External Links

No external refs found!

LOC_Os05g41172.2 (SUVH1, LOC_Os05g41172)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation