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  5. LOC_Os05g41100.1

LOC_Os05g41100.1 (LOC_Os05g41100)


Aliases : LOC_Os05g41100

Description : no hits & (original description: none)


Gene families : OG0006318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006318_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g41100.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G24080 No alias KRR1 family protein 0.07 OrthoFinder output from all 47 species
Aob_g18001 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.21G041100.1 Ceric.21G041100 not classified & original description: pacid=50602652... 0.05 OrthoFinder output from all 47 species
Cre10.g441450 No alias No description available 0.05 OrthoFinder output from all 47 species
Dcu_g01575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g30786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_6888g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g13090.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g12691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08043 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo409885 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc07g064350.3.1 Solyc07g064350 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Zm00001e013253_P001 Zm00001e013253 no hits & (original description: none) 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR024626 Kri1-like_C 499 577
IPR018034 Kri1 346 445
No external refs found!