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  5. LOC_Os05g40710.1

LOC_Os05g40710.1 (RGA2, GAI, LOC_Os05g40710)


Aliases : RGA2, GAI, LOC_Os05g40710

Description : transcription factor (GRAS)


Gene families : OG0003436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003436_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g40710.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00211410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
AMTR_s00036p00212000 SCR, SGR1,... RNA biosynthesis.transcriptional activation.GRAS... 0.02 OrthoFinder output from all 47 species
AT3G54220 SCR, SGR1 GRAS family transcription factor 0.02 OrthoFinder output from all 47 species
Aev_g03339 SCR, SGR1 gravity signalling transcription factor *(SCR) &... 0.01 OrthoFinder output from all 47 species
Dac_g23463 SCR, SGR1 gravity signalling transcription factor *(SCR) &... 0.03 OrthoFinder output from all 47 species
Ore_g30171 SCR, SGR1 gravity signalling transcription factor *(SCR) &... 0.01 OrthoFinder output from all 47 species
Sam_g19454 No alias GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08011 SCR, SGR1 gravity signalling transcription factor *(SCR) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 117 484
No external refs found!