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  5. LOC_Os05g38850.1

LOC_Os05g38850.1 (MCM8, LOC_Os05g38850)


Aliases : MCM8, LOC_Os05g38850

Description : component MCM8 of MCM8-9 cell cycle auxiliary complex


Gene families : OG0008313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008313_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g38850.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT3G09660 MCM8 minichromosome maintenance 8 0.03 OrthoFinder output from all 47 species
Aop_g12315 MCM8 component *(MCM8) of MCM8-9 cell cycle auxiliary complex... 0.04 OrthoFinder output from all 47 species
Cre16.g665950 MCM8 Cell cycle.interphase.DNA replication.initiation.MCM8-9... 0.03 OrthoFinder output from all 47 species
MA_10312461g0010 MCM8 component MCM8 of MCM8-9 cell cycle auxiliary complex 0.02 OrthoFinder output from all 47 species
MA_378797g0010 MCM8 Probable DNA helicase MCM8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g08270.1 MCM8 component MCM8 of MCM8-9 cell cycle auxiliary complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001208 MCM_dom 329 548
IPR041562 MCM_lid 551 615
IPR033762 MCM_OB 139 267
No external refs found!